PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026406
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 209aa    MW: 22850.6 Da    PI: 9.5807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026406genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.51.6e-19161198238
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                            Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v
  PGSC0003DMP400026406 161 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQV 198
                           7***************************99*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-21145199IPR003657WRKY domain
SuperFamilySSF1182903.53E-18153201IPR003657WRKY domain
PROSITE profilePS5081120.151155198IPR003657WRKY domain
SMARTSM007747.4E-15160208IPR003657WRKY domain
PfamPF031066.1E-17162198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNGENRRLRD MLNQVKNNYN TLQMHMMTVM QQNQESGQRD GKSEEVKHQN GHGGGGGQVV  60
PRQFMDLGLA ASEAEETSQS SSEGRSGREK SRSPANNIEA GSTCGIIRED SPEKESPGWG  120
SNKIPRLGNS STNKPADQAT EATMRKARVS VRARSEAPMI TDGCQWRKYG QKMAKGNPCP  180
RAYYRCTMAA GCPVRKQVCF CFSVLGQS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3563190.0AY356319.1 Solanum tuberosum L381 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364165.11e-145PREDICTED: WRKY transcription factor 6-like
SwissprotQ9C5197e-60WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1B7H31e-155M1B7H3_SOLTU; Uncharacterized protein
TrEMBLM1B7H41e-155M1B7H4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000388521e-145(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.16e-54WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]